Are there issues with sharing /home and other directories between linux distributions on the same system? What about sharing between linux and bsd?
Just curious.
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I don’t know how BSD works, but linux has $XDG_ configs in homedir of user for most configuration files.
You could sidestep any conflicts by just changing your linux-systems $XDG_ -environmental variables to something like ~/.local.linux, ~/.config.linux and so on.
Ultimately almost any path under $HOME can ba changed with corresponding environmental variable in linux - so you can split directories if necessary.